Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Sps_00131 | Sps_01567 | PFAM: Protein of unknown function (DUF2489). | YKOF-like protein; PFAM: YKOF-related Family. | 0.400 |
Sps_00131 | Sps_01846 | PFAM: Protein of unknown function (DUF2489). | Hypothetical protein. | 0.460 |
Sps_00131 | Sps_01860 | PFAM: Protein of unknown function (DUF2489). | PFAM: Late competence development protein ComFB. | 0.438 |
Sps_00131 | Sps_05108 | PFAM: Protein of unknown function (DUF2489). | TIGRFAM: outer membrane protein. | 0.584 |
Sps_00802 | Sps_01567 | Hypothetical protein. | YKOF-like protein; PFAM: YKOF-related Family. | 0.471 |
Sps_00802 | Sps_01846 | Hypothetical protein. | Hypothetical protein. | 0.758 |
Sps_00802 | Sps_01860 | Hypothetical protein. | PFAM: Late competence development protein ComFB. | 0.505 |
Sps_00802 | Sps_03254 | Hypothetical protein. | Hypothetical protein. | 0.566 |
Sps_00802 | Sps_05108 | Hypothetical protein. | TIGRFAM: outer membrane protein. | 0.631 |
Sps_01567 | Sps_00131 | YKOF-like protein; PFAM: YKOF-related Family. | PFAM: Protein of unknown function (DUF2489). | 0.400 |
Sps_01567 | Sps_00802 | YKOF-like protein; PFAM: YKOF-related Family. | Hypothetical protein. | 0.471 |
Sps_01567 | Sps_01846 | YKOF-like protein; PFAM: YKOF-related Family. | Hypothetical protein. | 0.551 |
Sps_01567 | Sps_01860 | YKOF-like protein; PFAM: YKOF-related Family. | PFAM: Late competence development protein ComFB. | 0.551 |
Sps_01567 | Sps_02914 | YKOF-like protein; PFAM: YKOF-related Family. | Outer membrane protein (porin); PFAM: Gram-negative porin. | 0.515 |
Sps_01567 | Sps_03254 | YKOF-like protein; PFAM: YKOF-related Family. | Hypothetical protein. | 0.497 |
Sps_01567 | Sps_05108 | YKOF-like protein; PFAM: YKOF-related Family. | TIGRFAM: outer membrane protein. | 0.711 |
Sps_01846 | Sps_00131 | Hypothetical protein. | PFAM: Protein of unknown function (DUF2489). | 0.460 |
Sps_01846 | Sps_00802 | Hypothetical protein. | Hypothetical protein. | 0.758 |
Sps_01846 | Sps_01567 | Hypothetical protein. | YKOF-like protein; PFAM: YKOF-related Family. | 0.551 |
Sps_01846 | Sps_01860 | Hypothetical protein. | PFAM: Late competence development protein ComFB. | 0.539 |
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