STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sps_05159Hypothetical protein. (168 aa)    
Predicted Functional Partners:
Sps_05165
PFAM: C-5 cytosine-specific DNA methylase.
       0.783
Sps_05158
Hypothetical protein.
       0.773
Sps_05160
Hypothetical protein.
       0.773
Sps_05161
Hypothetical protein.
       0.773
Sps_05162
PFAM: Adhesin biosynthesis transcription regulatory protein.
       0.773
Sps_05163
PFAM: DNA N-6-adenine-methyltransferase (Dam); TIGRFAM: phage N-6-adenine-methyltransferase.
       0.773
Sps_05164
Hypothetical protein.
       0.773
Sps_05157
PFAM: Pyocin activator protein PrtN.
       0.726
Sps_05156
Hypothetical protein.
       0.701
Sps_05155
Hypothetical protein.
       0.641
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.