Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Sps_02628 | Sps_05218 | Sps_02628 | Sps_05218 | Putative O-methyltransferase; Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC). | Hypothetical protein; PFAM: S-adenosyl-L-methionine-dependent methyltransferase. | 0.452 |
Sps_04278 | Sps_05218 | Sps_04278 | Sps_05218 | Zn-dependent hydrolase, glyoxylase; PFAM: Metallo-beta-lactamase superfamily. | Hypothetical protein; PFAM: S-adenosyl-L-methionine-dependent methyltransferase. | 0.451 |
Sps_05217 | Sps_05218 | Sps_05217 | Sps_05218 | 'PFAM: Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella'. | Hypothetical protein; PFAM: S-adenosyl-L-methionine-dependent methyltransferase. | 0.423 |
Sps_05218 | Sps_02628 | Sps_05218 | Sps_02628 | Hypothetical protein; PFAM: S-adenosyl-L-methionine-dependent methyltransferase. | Putative O-methyltransferase; Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC). | 0.452 |
Sps_05218 | Sps_04278 | Sps_05218 | Sps_04278 | Hypothetical protein; PFAM: S-adenosyl-L-methionine-dependent methyltransferase. | Zn-dependent hydrolase, glyoxylase; PFAM: Metallo-beta-lactamase superfamily. | 0.451 |
Sps_05218 | Sps_05217 | Sps_05218 | Sps_05217 | Hypothetical protein; PFAM: S-adenosyl-L-methionine-dependent methyltransferase. | 'PFAM: Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella'. | 0.423 |
Sps_05218 | Sps_05219 | Sps_05218 | Sps_05219 | Hypothetical protein; PFAM: S-adenosyl-L-methionine-dependent methyltransferase. | PFAM: Bacterial protein of unknown function (DUF885). | 0.472 |
Sps_05218 | lgt | Sps_05218 | Sps_02820 | Hypothetical protein; PFAM: S-adenosyl-L-methionine-dependent methyltransferase. | Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family. | 0.416 |
Sps_05218 | murF | Sps_05218 | Sps_03276 | Hypothetical protein; PFAM: S-adenosyl-L-methionine-dependent methyltransferase. | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.418 |
Sps_05218 | xseB | Sps_05218 | Sps_02244 | Hypothetical protein; PFAM: S-adenosyl-L-methionine-dependent methyltransferase. | Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. | 0.466 |
Sps_05219 | Sps_05218 | Sps_05219 | Sps_05218 | PFAM: Bacterial protein of unknown function (DUF885). | Hypothetical protein; PFAM: S-adenosyl-L-methionine-dependent methyltransferase. | 0.472 |
lgt | Sps_05218 | Sps_02820 | Sps_05218 | Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family. | Hypothetical protein; PFAM: S-adenosyl-L-methionine-dependent methyltransferase. | 0.416 |
murF | Sps_05218 | Sps_03276 | Sps_05218 | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | Hypothetical protein; PFAM: S-adenosyl-L-methionine-dependent methyltransferase. | 0.418 |
xseB | Sps_05218 | Sps_02244 | Sps_05218 | Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. | Hypothetical protein; PFAM: S-adenosyl-L-methionine-dependent methyltransferase. | 0.466 |