STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sps_05611'PFAM: Bacterial regulatory proteins, gntR family'. (122 aa)    
Predicted Functional Partners:
Sps_05610
ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter.
 
  
 0.842
Sps_05609
Hypothetical protein.
       0.681
Sps_05613
ABC-type Na+ transport system, ATPase component; PFAM: ABC transporter.
 
     0.673
Sps_05612
PFAM: Alpha/beta hydrolase family.
 
     0.627
Sps_02335
Putative transcriptional regulator; 'PFAM: Uncharacterized ACR, COG1678'; Belongs to the UPF0301 (AlgH) family.
   
    0.601
Sps_05614
ABC-type Na+ efflux pump, permease component; PFAM: ABC-2 family transporter protein.
 
     0.567
cobB
NAD-dependent protein deacetylase, SIR2 family; PFAM: Sir2 family; Belongs to the sirtuin family. Class III subfamily.
  
    0.494
Sps_05608
AMP-forming long-chain acyl-CoA synthetase; PFAM: AMP-binding enzyme.
       0.419
Sps_00531
Hypothetical protein; PFAM: Carbohydrate binding domain; Chitin binding domain.
   
    0.414
Sps_01349
ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter.
  
  
 0.402
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.