STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
swp_0685Conserved hypothetical protein; IPR003453, Protein of unknown function DUF140. (235 aa)    
Predicted Functional Partners:
swp_0684
ABC transporter, ATP-binding protein, putative.
 
 0.999
swp_0686
Mce4/Rv3499c/MTV023.06c protein.
 
 0.999
swp_0687
Toluene tolerance.
 
 
 0.956
swp_0688
SpoIIAA family protein.
  
 0.948
swp_1613
Anti-anti-sigma factor family protein; Belongs to the anti-sigma-factor antagonist family.
   
   0.857
swp_2169
Antisigma-factor antagonist (STAS) domain protein; Belongs to the anti-sigma-factor antagonist family.
   
   0.857
msbA
ABC transporter, ATP-binding protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
 
 
 0.683
swp_0678
ABC transporter.
 
  
  0.645
swp_1662
ABC transporter, transmembrane region:ABC transporter.
  
 
 0.625
swp_3973
ABC transporter, transmembrane region:ABC transporter.
  
 
 0.625
Your Current Organism:
Shewanella piezotolerans
NCBI taxonomy Id: 225849
Other names: S. piezotolerans WP3, Shewanella piezotolerans WP3, Shewanella piezotolerans str. WP3, Shewanella piezotolerans strain WP3, Shewanella sp. WP3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.