Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ARA00044.1Squalene synthase HpnC; Derived by automated computational analysis using gene prediction method: Protein Homology. (274 aa)    
Predicted Functional Partners:
AQZ99625.1
Squalene synthase HpnD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
0.933
ARA00046.1
Desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.856
AQZ98615.1
NAD(P)-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.717
AQZ97888.1
Type I glyceraldehyde-3-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
  
 0.715
rpsA
30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
   
    0.598
AQZ97027.1
MATE family efflux transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.572
AQZ97632.1
MATE family efflux transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.572
AQZ98220.1
Octaprenyl diphosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FPP/GGPP synthase family.
  
 
 0.503
AQZ99911.1
Polyprenyl synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FPP/GGPP synthase family.
  
 
 0.503
B5M06_15130
IS5/IS1182 family transposase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.481
Your Current Organism:
Comamonas kerstersii
NCBI taxonomy Id: 225992
Other names: Acidovorax sp. 121606, Acidovorax sp. 202149, C. kerstersii, CCUG 15333, Comamonas kerstersii Wauters et al. 2003, Commamonas terrigena DNA group 3, DSM 16026, LMG 3475, LMG:3475, strain AF61
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