Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EF_0804Amino acid ABC transporter, amino acid-binding protein; Similar to GP:3603430; identified by sequence similarity; putative. (276 aa)    
Predicted Functional Partners:
EF_0806
Amino acid ABC transporter, permease protein; Similar to GB:X69602, PID:436322, and PID:928989; identified by sequence similarity; putative.
 0.999
EF_0805
Amino acid ABC transporter, ATP-binding protein; Similar to GB:X65561, and PID:296267; identified by sequence similarity; putative.
 
 0.997
EF_1118
Amino acid ABC transporter, permease protein; Identified by match to TIGR protein family HMM TIGR01726.
 
 0.897
EF_1117
Amino acid ABC transporter, permease protein; Similar to GB:D10216, GB:D11334, GB:D11333, GB:X72215, GB:L18781, GB:X62429, GB:X77223, GB:X77224, GB:D12892, GB:S73501, GB:D12887, GB:D12888, GB:D12889, GB:D12890, GB:D12891, SP:P28069, and PID:488129; identified by sequence similarity; putative.
 
 0.893
EF_0760
Amino acid ABC transporter, ATP-binding protein; Identified by match to TIGR protein family HMM TIGR01193.
 
 
 0.831
EF_0892
Amino acid ABC transporter, ATP-binding protein; Similar to GP:10174080; identified by sequence similarity; putative.
 
 
 0.831
EF_1120
Amino acid ABC transporter, ATP-binding protein; Similar to SP:P27675; identified by sequence similarity; putative.
 
 
 0.827
cinA
Competence/damage-inducible protein CinA; Similar to GP:1842440, SP:Q04730, and PID:142946; identified by sequence similarity; putative; Belongs to the CinA family.
  
  
 0.826
EF_0246
Amino acid ABC transporter, ATP-binding protein; Similar to SP:P35651, and PID:550405; identified by sequence similarity; putative.
 
 
 0.823
rpsR
Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
   
  
 0.740
Your Current Organism:
Enterococcus faecalis V583
NCBI taxonomy Id: 226185
Other names: E. faecalis V583, Enterococcus faecalis str. V583, Enterococcus faecalis strain V583
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