Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EF_1995Hypothetical protein; Identified by Glimmer2; putative. (106 aa)    
Predicted Functional Partners:
EF_1994
Conserved hypothetical protein; Similar to GP:21359772, SP:P01550, GB:S65575, and PID:420325; identified by sequence similarity; putative.
       0.773
EF_1992
Endolysin; Similar to GP:10880731, and GP:10880731; identified by sequence similarity; putative.
       0.423
EF_1993
Holin; Similar to GP:496282; identified by sequence similarity; putative.
       0.423
Your Current Organism:
Enterococcus faecalis V583
NCBI taxonomy Id: 226185
Other names: E. faecalis V583, Enterococcus faecalis str. V583, Enterococcus faecalis strain V583
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