STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EF_2005Major tail protein, putative; Similar to GP:3341920; identified by sequence similarity; putative. (282 aa)    
Predicted Functional Partners:
EF_2008
Ribosomal protein L23, putative.
       0.785
EF_2006
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
EF_2007
Identified by match to TIGR protein family HMM TIGR01725.
       0.773
EF_2004
Conserved domain protein.
       0.613
EF_1288
Conserved hypothetical protein; Similar to GP:10172624; identified by sequence similarity; putative.
 
     0.600
EF_2820
Major capsid protein; Identified by match to PFAM protein family HMM PF04000.
 
 
   0.599
EF_1292
Holin, putative; Identified by match to TIGR protein family HMM TIGR01593.
 
     0.592
EF_1290
Structural protein, putative; Similar to GP:456319; identified by sequence similarity; putative.
 
 
 0.547
EF_2823
Terminase, large subunit, putative; Similar to GP:3128374; identified by sequence similarity; putative.
 
     0.497
EF_0325
DNA polymerase, putative; Similar to SP:P37965, GB:Z26522, PID:403373, and GB:AL009126; identified by sequence similarity; putative.
  
     0.491
Your Current Organism:
Enterococcus faecalis V583
NCBI taxonomy Id: 226185
Other names: E. faecalis V583, Enterococcus faecalis str. V583, Enterococcus faecalis strain V583
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.