Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EF_2011Hypothetical protein; Identified by Glimmer2; putative. (295 aa)    
Predicted Functional Partners:
EF_2012
Conserved hypothetical protein; Identified by match to PFAM protein family HMM PF02847.
       0.833
EF_2010
Hypothetical protein; Identified by Glimmer2; putative.
       0.722
EF_2016
Portal protein; Similar to GP:10176156; identified by sequence similarity; putative.
 
     0.502
EF_2013
Hypothetical protein; Identified by Glimmer2; putative.
       0.425
Your Current Organism:
Enterococcus faecalis V583
NCBI taxonomy Id: 226185
Other names: E. faecalis V583, Enterococcus faecalis str. V583, Enterococcus faecalis strain V583
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