Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EF_2015Minor head protein, putative; Identified by match to PFAM protein family HMM PF04233. (634 aa)    
Predicted Functional Partners:
EF_2016
Portal protein; Similar to GP:10176156; identified by sequence similarity; putative.
 
    0.890
EF_2811
Minor structural protein; Similar to pblB in Streptococcus mitis phage SM1; identified by match to TIGR protein family HMM TIGR01665.
     
 0.837
EF_2017
Terminase, large subunit, putative; Similar to GP:2765137; identified by sequence similarity; putative.
 
     0.833
EF_2018
Conserved hypothetical protein; Similar to GP:10176158, and GP:13346844; identified by sequence similarity; putative.
 
   
 0.808
EF_2003
Tape measure protein, putative; Good homology to pblA from Streptococcus mitis phage SM1; similar to GP:11177172, and GP:11177172; identified by sequence similarity; putative.
 
   
 0.798
EF_0348
Tail protein; Good homology to pblA from Streptococcus mitis phage SM1; similar to GP:10732857; identified by sequence similarity; putative.
 
   
 0.785
EF_2014
Coenzyme F420 hydrogenase domain protein.
       0.773
EF_2813
Tail tape meausure protein; Similar to GP:8918797; identified by sequence similarity; putative.
 
   
 0.754
EF_3155
Conserved hypothetical protein; Identified by match to TIGR protein family HMM TIGR01564.
      
 0.639
EF_0334
Portal protein; Similar to SP:P54309, GB:L25441, SP:P53609, and PID:466491; identified by sequence similarity; putative.
 
    0.607
Your Current Organism:
Enterococcus faecalis V583
NCBI taxonomy Id: 226185
Other names: E. faecalis V583, Enterococcus faecalis str. V583, Enterococcus faecalis strain V583
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