Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EF_2164Membrane protein, putative. (603 aa)    
Predicted Functional Partners:
EF_2165
Identified by match to PFAM protein family HMM PF03435.
 
   
 0.861
EF_2167
Glycosyl transferase, group 2 family protein; Similar to GP:6601351; identified by sequence similarity; putative.
  
  
 0.741
EF_2169
Membrane protein, putative; Identified by match to PFAM protein family HMM PF03125.
 
   
 0.741
EF_2179
Conserved hypothetical protein; Similar to GP:15025331; identified by sequence similarity; putative.
  
   
 0.713
EF_2189
Conserved hypothetical protein; Similar to GP:12232617, and GB:M69234; identified by sequence similarity; putative.
  
   
 0.688
EF_2166
Membrane protein, putative; Similar to GP:3907608; identified by sequence similarity; putative.
     
 0.673
EF_2196
Glycosyl transferase, group 2 family protein; Similar to GP:3608392; identified by sequence similarity; putative.
 
   
 0.663
EF_1599
TPR domain transcriptional regulator, Cro/CI family; Similar to GP:6759484; identified by sequence similarity; putative.
  
     0.656
EF_3060
Secreted lipase, putative; Similar to GP:9246950, and GP:9367038; identified by sequence similarity; putative.
  
     0.637
EF_2168
licD1 protein, putative; Similar to GP:5001692, and GP:5001692; identified by sequence similarity; putative.
     
 0.614
Your Current Organism:
Enterococcus faecalis V583
NCBI taxonomy Id: 226185
Other names: E. faecalis V583, Enterococcus faecalis str. V583, Enterococcus faecalis strain V583
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