Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rpmG-4Ribosomal protein L33; Similar to GB:M14219, SP:P07585, PID:181170, and PID:609452; identified by sequence similarity; putative; Belongs to the bacterial ribosomal protein bL33 family. (49 aa)    
Predicted Functional Partners:
rpsI
Ribosomal protein S9; Similar to SP:P21470; identified by sequence similarity; putative; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.981
rpmB
Ribosomal protein L28; Identified by match to TIGR protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family.
  
 
 0.971
rpmE
Ribosomal protein L31; Similar to GB:X66113, SP:Q01780, and PID:35555; identified by sequence similarity; putative.
  
 
 0.965
rpsR
Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
  
 
 0.956
rpsC
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
  
 
 0.952
rpsO
Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
  
 
 0.951
rpmJ
Ribosomal protein L36; Identified by match to PFAM protein family HMM PF00444; Belongs to the bacterial ribosomal protein bL36 family.
  
 
 0.950
rplQ
Ribosomal protein L17; Similar to SP:P20277; identified by sequence similarity; putative.
  
 
 0.950
rpmA
Ribosomal protein L27; Similar to SP:P19663; identified by sequence similarity; putative; Belongs to the bacterial ribosomal protein bL27 family.
  
 
 0.948
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
   
 
 0.947
Your Current Organism:
Enterococcus faecalis V583
NCBI taxonomy Id: 226185
Other names: E. faecalis V583, Enterococcus faecalis str. V583, Enterococcus faecalis strain V583
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