Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EF_3207Dihydrouridine synthase family protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. (324 aa)    
Predicted Functional Partners:
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
 
 
 
 0.504
EF_1029
Conserved hypothetical protein; Similar to GP:22775943; identified by sequence similarity; putative.
  
    0.501
EF_3208
ABC transporter, permease protein; Similar to GB:J05593, GB:S48568, GB:M32304, GB:X54533, SP:P16035, PID:1517893, PID:307195, PID:339707, and PID:37181; identified by sequence similarity; putative.
       0.496
EF_3209
ABC transporter, ATP-binding protein; Similar to SP:P36879; identified by sequence similarity; putative.
     
 0.495
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
  
 0.485
EF_0748
Rhodanese family protein; Similar to GP:2565150; identified by sequence similarity; putative; Belongs to the UPF0176 family.
 
    0.441
EF_2792
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.416
Your Current Organism:
Enterococcus faecalis V583
NCBI taxonomy Id: 226185
Other names: E. faecalis V583, Enterococcus faecalis str. V583, Enterococcus faecalis strain V583
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