Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BT_0076Transposase; Belongs to the 'phage' integrase family. (410 aa)    
Predicted Functional Partners:
BT_0110
Putative regulatory protein; rteC-like, tetracycline resistance element mobilization regulatory protein.
  
    0.682
BT_2322
Putative integrase; Belongs to the 'phage' integrase family.
  
    0.672
BT_0077
Conserved hypothetical protein.
 
    0.659
BT_2292
Conserved protein found in conjugate transposon; TraK homolog.
  
    0.643
BT_1124
Putative integrase; Belongs to the 'phage' integrase family.
  
    0.568
BT_1129
Putative DNA binding protein.
 
    0.545
BT_1427
Tetracycline resistance element mobilization regulatory protein rteC.
  
    0.503
BT_0109
Putative DNA binding protein.
  
    0.474
BT_0085
Conserved protein found in conjugate transposon; TraO homolog.
  
    0.464
BT_0101
Putative mobilisation protein; Mobilization protein BmgA-like.
  
    0.463
Your Current Organism:
Bacteroides thetaiotaomicron
NCBI taxonomy Id: 226186
Other names: B. thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron str. VPI-5482, Bacteroides thetaiotaomicron strain VPI-5482
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