Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BT_0140SusC homolog. (1097 aa)    
Predicted Functional Partners:
BT_0141
SusD homolog.
 
   0.953
BT_0191
SusD homolog.
 
   0.811
BT_3102
SusD homolog.
 
   0.800
BT_3175
SusD homolog.
 
   0.799
BT_4659
SusD homolog.
 
   0.788
BT_1630
SusD homolog.
 
   0.784
BT_4085
Weak SusD homolog.
  
   0.768
BT_0363
SusD homolog.
  
   0.758
BT_4089
SusD homolog.
  
   0.757
BT_0361
SusD homolog.
  
   0.755
Your Current Organism:
Bacteroides thetaiotaomicron
NCBI taxonomy Id: 226186
Other names: B. thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron str. VPI-5482, Bacteroides thetaiotaomicron strain VPI-5482
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