Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BT_0217Nitroreductase-like protein. (200 aa)    
Predicted Functional Partners:
BT_0775
Ferredoxin-type protein.
 
  
 0.586
BT_0216
Rubrerythrin-like.
  
    0.554
BT_0215
Iron uptake regulatory protein; Belongs to the Fur family.
  
  
 0.531
BT_1600
BexA, membrane proein.
 
   
 0.522
BT_0776
Conserved hypothetical protein; Twin-arginine translocation pathway signal.
  
    0.506
BT_2685
Conserved hypothetical protein.
  
  
 0.483
BT_1599
BexA, membrane protein.
 
   
 0.462
BT_1192
Putative xylanase.
  
  
 0.459
BT_2366
cAMP-binding-like regulatory-protein.
  
  
 0.456
BT_0963
Ferredoxin-type protein napF homolog.
  
  
 0.453
Your Current Organism:
Bacteroides thetaiotaomicron
NCBI taxonomy Id: 226186
Other names: B. thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron str. VPI-5482, Bacteroides thetaiotaomicron strain VPI-5482
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