Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BT_0403Putative DNA binding protein. (165 aa)    
Predicted Functional Partners:
BT_0795
DNA-binding protein-like protein.
  
     0.756
BT_2929
Putative non-specific DNA-binding protein.
  
    0.751
BT_4472
Conserved hypothetical protein.
  
     0.719
BT_0281
Putative DNA-binding protein; HU homolog.
  
     0.702
BT_2504
Conserved hypothetical protein.
  
    0.702
BT_3624
Conserved hypothetical protein.
  
     0.659
BT_2746
Thiol:disulfide interchange protein tlpA.
 
     0.569
BT_1674
Hypothetical protein.
  
     0.567
BT_0404
Hypothetical protein; VirE N-terminal.
 
    0.566
BT_1894
TPR-repeat-containing protein.
 
     0.557
Your Current Organism:
Bacteroides thetaiotaomicron
NCBI taxonomy Id: 226186
Other names: B. thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron str. VPI-5482, Bacteroides thetaiotaomicron strain VPI-5482
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