Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BT_0635Putative transcriptional regulator. (125 aa)    
Predicted Functional Partners:
BT_4200
Putative transcriptional regulator; Beta-lactamase regulatory protein 1-like.
 
 
 0.982
BT_4201
Putative transcriptional regulator; Beta-lactamase regulatory protein 1-like.
 
 
 0.982
BT_0813
TonB.
 
 
 0.979
BT_3898
TonB.
 
 
 0.969
BT_0636
Putative transcriptional regulator.
 
  
 0.936
BT_3899
Transcriptional regulator.
  
 
 
0.912
BT_4198
Putative regulatory protein.
  
 
 
0.906
BT_4199
Putative transcriptional regulator; Beta-lactamase regulatory protein 1-like.
 
  
 0.830
BT_0113
Hypothetical protein.
  
  
 0.513
BT_1092
Putative heavy-metal binding protein.
  
  
 0.513
Your Current Organism:
Bacteroides thetaiotaomicron
NCBI taxonomy Id: 226186
Other names: B. thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron str. VPI-5482, Bacteroides thetaiotaomicron strain VPI-5482
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