Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BT_0665Fibronectin, type III-like fold. (212 aa)    
Predicted Functional Partners:
BT_0666
Hypothetical protein.
  
    0.785
BT_0664
Conserved hypothetical protein.
  
    0.782
BT_0667
Signal peptidase I (SPase I); Belongs to the peptidase S26 family.
  
    0.769
BT_0668
Conserved hypothetical protein.
  
    0.758
BT_0663
Hypothetical protein.
  
    0.685
BT_0662
O-antigen polymerase.
  
    0.658
BT_0669
Putative cation efflux system protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.482
BT_0670
Putative cation efflux system; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
    0.460
BT_0671
Outer membrane protein TolC, putative.
  
    0.454
BT_0672
Drug efflux protein; Acriflavine resistance-like protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
    0.407
Your Current Organism:
Bacteroides thetaiotaomicron
NCBI taxonomy Id: 226186
Other names: B. thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron str. VPI-5482, Bacteroides thetaiotaomicron strain VPI-5482
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