Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BT_0728Transcriptional regulator. (299 aa)    
Predicted Functional Partners:
BT_1235
AraC-type transcription regulator.
  
    0.749
BT_2792
AraC/XylS family transcriptional regulator.
  
    0.738
BT_0559
Transcriptional regulator.
  
    0.728
BT_1090
AraC-type transcription regulator.
  
    0.728
BT_0729
Transcriptional regulator.
 
   
0.724
BT_1404
Putative transcriptional regulator.
  
    0.706
BT_0995
Transcription regulator, AraC-type.
  
    0.701
BT_2120
Transcriptional regulator.
  
    0.698
BT_3974
Putative AraC-family regulatory protein.
  
    0.697
BT_1968
Transcriptional regulator.
  
    0.682
Your Current Organism:
Bacteroides thetaiotaomicron
NCBI taxonomy Id: 226186
Other names: B. thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron str. VPI-5482, Bacteroides thetaiotaomicron strain VPI-5482
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