Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BT_0809Putative lipoprotein. (360 aa)    
Predicted Functional Partners:
BT_0808
Putative signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins.
  
    0.837
BT_0810
Conserved hypothetical protein.
  
    0.830
BT_3225
Conserved hypothetical protein.
 
    0.796
BT_0591
Hypothetical protein; Homeobox.
  
    0.786
BT_3252
Putative transmembrane protein.
  
    0.785
BT_4306
Conserved hypothetical protein.
  
    0.785
BT_4239
Conserved hypothetical protein.
 
    0.784
BT_3949
Conserved hypothetical protein.
  
    0.776
BT_3578
Conserved hypothetical protein.
  
    0.775
BT_3727
Conserved hypothetical protein.
  
    0.775
Your Current Organism:
Bacteroides thetaiotaomicron
NCBI taxonomy Id: 226186
Other names: B. thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron str. VPI-5482, Bacteroides thetaiotaomicron strain VPI-5482
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