Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BT_0904BatD, conserved hypothetical protein. (608 aa)    
Predicted Functional Partners:
BT_0903
BatE, TRP domain containing protein.
  
 0.987
BT_0905
BatC, conserved hypothetical protein.
 
 
 0.949
BT_0906
BatB, conserved hypothetical protein.
 
  
 0.949
BT_0907
BatA; Bacteroides aerotolerance operon.
 
  
 0.931
BT_0908
Putative conserved membrane exported protein.
 
  
 0.915
BT_0909
Von Willebrand factor-like, type A.
 
  
 0.914
BT_0910
Magnesium chelatase, subunit I.
 
  
 0.718
BT_0902
Conserved hypothetical protein.
 
     0.686
BT_0901
Putative universal stress protein UspA.
 
   
 0.602
BT_4593
Conserved hypothetical protein; YbbR-like.
 
    0.503
Your Current Organism:
Bacteroides thetaiotaomicron
NCBI taxonomy Id: 226186
Other names: B. thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron str. VPI-5482, Bacteroides thetaiotaomicron strain VPI-5482
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