Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BT_0912DNA-binding protein HU; Belongs to the bacterial histone-like protein family. (90 aa)    
Predicted Functional Partners:
BT_0911
Putative integration host factor IHF alpha subunit; Belongs to the bacterial histone-like protein family.
 
    0.874
rimO
Putative Fe-S oxidoreductase; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.
  
   0.838
ftsY
Recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).
  
  
 0.832
rpmG
50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
  
  
 0.629
BT_0910
Magnesium chelatase, subunit I.
  
    0.595
BT_0914a
Hypothetical protein; BT-GM0929.
       0.583
BT_1499
DNA-binding protein HU; Belongs to the bacterial histone-like protein family.
  
    0.583
rpmB
50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
    0.556
BT_0909
Von Willebrand factor-like, type A.
  
    0.529
BT_0908
Putative conserved membrane exported protein.
  
    0.521
Your Current Organism:
Bacteroides thetaiotaomicron
NCBI taxonomy Id: 226186
Other names: B. thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron str. VPI-5482, Bacteroides thetaiotaomicron strain VPI-5482
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