Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BT_0943Penicillin-binding protein 2B (PBP-2B). (300 aa)    
Predicted Functional Partners:
BT_0743
Penicillin-binding protein 1A (PBP-1a).
 
 0.945
BT_3816
Penicillin-binding protein 2 (PBP-2).
  
 
  0.936
mtgA
Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.
   
 0.928
BT_3187
Penicillin-binding protein, D-alanyl-D-alanine carboxypeptidase.
   
 
 0.914
BT_3453
Penicillin-binding protein.
  
 
 
0.912
BT_0162
Penicillin-binding protein 1C (PBP-1c).
     
 0.907
BT_3449
Rod shape-determining protein rodA; Belongs to the SEDS family.
 
 
 0.780
murE
UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.
 
  
 0.727
BT_3446
Cell division protein FtsQ.
 
 
 0.706
BT_3817
Rod shape-determining protein rodA; Belongs to the SEDS family.
 
 
 0.693
Your Current Organism:
Bacteroides thetaiotaomicron
NCBI taxonomy Id: 226186
Other names: B. thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron str. VPI-5482, Bacteroides thetaiotaomicron strain VPI-5482
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