Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BT_0956Conserved hypothetical protein, putative transmembrane protein. (394 aa)    
Predicted Functional Partners:
BT_0955
Conserved hypothetical protein, putative membrane protein.
 
  
 0.963
BT_0954
Putative outer membrane protein.
 
  
 0.937
BT_0957
Putative transport-related membrane protein.
   
0.878
BT_0562
Putative ABC transporter ATP-binding protein.
 
  
 0.841
BT_0563
Putative ABC transporter ATP-binding protein or permease protein.
 
    0.806
BT_3904
Putative multidrug resistance protein.
 
  
 0.803
BT_0561
Putative ABC transport system, lipoprotein.
 
  
 0.794
BT_0560
Outer membrane efflux protein; Agglutination-like protein.
 
  
 0.552
BT_0958
Two-component system sensor histidine kinase/response regulator, hybrid (one component system).
  
  
 0.513
BT_0925
ABC transporter, ATP-binding protein.
 
  
 0.496
Your Current Organism:
Bacteroides thetaiotaomicron
NCBI taxonomy Id: 226186
Other names: B. thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron str. VPI-5482, Bacteroides thetaiotaomicron strain VPI-5482
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