Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BT_1002Pectin lyase fold/virulence factor. (619 aa)    
Predicted Functional Partners:
BT_1001
Putative alpha-rhamnosidase.
 
    0.951
BT_1003
Six-hairpin glycosidase.
 
  
 0.947
BT_1017
Conserved hypothetical protein.
 
  
 0.881
BT_1020
Six-hairpin glycosidase.
 
  
 0.877
BT_0984
Conserved hypothetical protein.
 
  
 0.868
BT_1031
Xylose isomerase-like TIM barrel.
 
  
 0.843
BT_1023
Putative pectate lyase.
  
  
 0.841
BT_0986
Glycoside hydrolase family 2, sugar binding protein.
 
 
 0.839
BT_0997
Conserved hypothetical protein.
 
    0.815
BT_0979
Pectin lyase fold/virulence factor.
 
  
 0.798
Your Current Organism:
Bacteroides thetaiotaomicron
NCBI taxonomy Id: 226186
Other names: B. thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron str. VPI-5482, Bacteroides thetaiotaomicron strain VPI-5482
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