Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BT_1503Integrase; Belongs to the 'phage' integrase family. (336 aa)    
Predicted Functional Partners:
BT_2990
Putative integrase; Belongs to the 'phage' integrase family.
  
     0.762
BT_1960
Integrase; Belongs to the 'phage' integrase family.
  
     0.710
BT_4009
Integrase; Belongs to the 'phage' integrase family.
  
     0.697
BT_2335
Integrase protein; Belongs to the 'phage' integrase family.
  
    0.690
BT_4023
Transposase.
  
     0.687
BT_1138
Transposase; Belongs to the 'phage' integrase family.
  
    0.646
BT_2277
Transposase; Belongs to the 'phage' integrase family.
  
     0.624
BT_1451
Conserved hypothetical protein.
  
    0.574
BT_1066
Conserved hypothetical protein.
  
     0.509
BT_4234
FimX-like protein.
  
    0.506
Your Current Organism:
Bacteroides thetaiotaomicron
NCBI taxonomy Id: 226186
Other names: B. thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron str. VPI-5482, Bacteroides thetaiotaomicron strain VPI-5482
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