Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
BT_1600BexA, membrane proein. (257 aa)    
Predicted Functional Partners:
BT_1599
BexA, membrane protein.
    0.975
ffh
Putative signal recognition protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily.
  
  
 0.650
BT_1597
Two-component system sensor histidine kinase.
  
    0.607
BT_1598
Putative two-component system sensor histidine kinase.
  
    0.607
BT_0217
Nitroreductase-like protein.
 
   
 0.522
BT_0723
Lipase, active site.
  
     0.522
BT_1634
Putative aminoglycoside phosphotransferase.
 
    0.522
BT_3912
Conserved hypothetical protein.
  
    0.467
BT_3251
Conserved hypothetical protein, putative integral membrane protein.
  
    0.458
BT_0566
alanyl-tRNA synthetase.
 
 
 0.456
Your Current Organism:
Bacteroides thetaiotaomicron
NCBI taxonomy Id: 226186
Other names: B. thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron str. VPI-5482, Bacteroides thetaiotaomicron strain VPI-5482
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