Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BT_1960Integrase; Belongs to the 'phage' integrase family. (212 aa)    
Predicted Functional Partners:
BT_4023
Transposase.
  
    0.786
BT_2469
Integrase.
 
    0.761
BT_0375
Integrase.
  
     0.747
BT_2890
Transposase; Belongs to the 'phage' integrase family.
  
    0.746
BT_1961
Transposase.
 
    0.743
BT_0595
Integrase; Belongs to the 'phage' integrase family.
  
    0.724
BT_1509
Integrase; Belongs to the 'phage' integrase family.
 
 
 
 0.717
BT_1513
Integrase; Belongs to the 'phage' integrase family.
 
   
 0.717
BT_1827
Transposase; Belongs to the 'phage' integrase family.
  
     0.715
BT_3916
Site-specific recombinase IntIA; Belongs to the 'phage' integrase family.
  
     0.715
Your Current Organism:
Bacteroides thetaiotaomicron
NCBI taxonomy Id: 226186
Other names: B. thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron str. VPI-5482, Bacteroides thetaiotaomicron strain VPI-5482
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