Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BT_2006Conserved hypothetical protein. (204 aa)    
Predicted Functional Partners:
BT_4595
Conserved hypothetical protein.
  
    0.773
BT_0574
Conserved hypothetical protein.
  
    0.772
BT_3832
Conserved hypothetical protein.
  
    0.764
BT_3226
uroporphyrinogen-III synthase HemD, putative.
  
    0.762
BT_2418
Conserved hypothetical protein.
  
     0.758
BT_2007
Conserved hypothetical protein, putative glycoprotease.
 
    0.756
BT_3818
Conserved hypothetical protein.
  
    0.750
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
 
    0.749
BT_0887
Conserved hypothetical protein.
  
     0.748
BT_3815
Putative membrane protein.
  
    0.745
Your Current Organism:
Bacteroides thetaiotaomicron
NCBI taxonomy Id: 226186
Other names: B. thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron str. VPI-5482, Bacteroides thetaiotaomicron strain VPI-5482
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