Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BT_2158Similar to putative dehydrogenases and relate proteins. (491 aa)    
Predicted Functional Partners:
BT_2157
Probable secreted glycosyl hydrolase.
 
    0.924
BT_2156
Sugar phosphate isomerase/epimerase homolog.
 
  
 0.876
BT_2159
Putative oxidoreductase.
 
    0.859
BT_4447
Conserved hypothetical protein.
 
    0.803
BT_4446
Sugar phosphate isomerase/epimerase.
 
  
 0.789
BT_3469
Probable secreted glycosyl hydrolase.
 
    0.770
lysS
lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.500
BT_2160
Putative regulatory protein.
  
    0.447
BT_2808
Putative inosine-uridine preferring nucleoside hydrolase.
  
  
 0.428
BT_4449
Putative dehydrogenase.
 
    0.426
Your Current Organism:
Bacteroides thetaiotaomicron
NCBI taxonomy Id: 226186
Other names: B. thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron str. VPI-5482, Bacteroides thetaiotaomicron strain VPI-5482
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