Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BT_2165Two-component system response regulator. (233 aa)    
Predicted Functional Partners:
BT_2166
Two-component system sensor histidine kinase.
 
 
 0.967
BT_0733
Two-component system sensor histidine kinase.
 
 
 0.822
BT_1738
Two-component system sensor histidine kinase.
  
   0.774
BT_1802
Two-component system sensor histidine kinase.
  
   0.774
BT_0994
Two-component system histidine kinase.
 
 
 
 0.759
BT_0536
Two-component system sensor protein.
  
   0.753
BT_1800
Putative two-component system sensor histidine kinase.
  
   0.742
BT_1597
Two-component system sensor histidine kinase.
  
   0.739
BT_2574
Two-component system sensor histidine kinase.
  
   0.739
BT_4057
Two-component system sensor histidine kinase.
 
 
 0.735
Your Current Organism:
Bacteroides thetaiotaomicron
NCBI taxonomy Id: 226186
Other names: B. thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron str. VPI-5482, Bacteroides thetaiotaomicron strain VPI-5482
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