Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BT_2169RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (182 aa)    
Predicted Functional Partners:
BT_2171
Putative anti-sigma factor; FrrF homolog.
 
   0.883
BT_2168
Coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
  
 0.829
BT_1618
Putative anti-sigma factor; FrrF homolog.
 
   0.765
BT_0965
Putative anti-sigma factor; FrrF homolog.
 
   0.764
BT_0753
Putative anti-sigma factor; FrrF homolog.
 
   0.763
BT_3038
Putative anti-sigma factor; FrrF homolog.
 
   0.760
BT_4644
Putative anti-sigma factor; FrrF homolog.
 
   0.759
BT_4356
Putative anti-sigma factor; FrrF homolog.
 
   0.758
BT_4635
Putative anti-sigma factor; FrrF homolog.
 
   0.756
BT_4706
Putative anti-sigma factor; FrrF homolog.
 
   0.755
Your Current Organism:
Bacteroides thetaiotaomicron
NCBI taxonomy Id: 226186
Other names: B. thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron str. VPI-5482, Bacteroides thetaiotaomicron strain VPI-5482
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