Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BT_2264Outer membrane protein Omp121. (984 aa)    
Predicted Functional Partners:
BT_2263
Putative lipoprotein.
 
 
 0.997
BT_2262
Hypothetical protein.
 
 
 0.991
BT_2261
Hypothetical protein.
  
 
 0.988
BT_2259
Putative lipoprotein.
 
  
 0.767
BT_0318
SusD homolog; May be part of a single gene with BT0319.
 
    0.760
BT_3752
SusD homolog.
 
    0.746
BT_3102
SusD homolog.
  
   0.734
BT_4088
SusC homolog.
 
  
 0.732
BT_0319
Conserved hypothetical protein; May be part of a single gene with BT0318.
 
    0.731
BT_2195
SusD homolog.
  
   0.726
Your Current Organism:
Bacteroides thetaiotaomicron
NCBI taxonomy Id: 226186
Other names: B. thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron str. VPI-5482, Bacteroides thetaiotaomicron strain VPI-5482
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