Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BT_2269SusD homolog. (469 aa)    
Predicted Functional Partners:
BT_2268
SusC homolog.
 
  
 0.980
BT_2364
SusC homolog.
 
 
   0.787
BT_2461
SusC homolog.
 
   0.753
BT_0317
SusC homolog.
 
     0.750
susC
SusC; Mediates transport of starch oligosaccharides from the surface of the outer membrane to the periplasm for subsequent degradation; Belongs to the TonB-dependent receptor family.
 
 
 0.739
BT_0318
SusD homolog; May be part of a single gene with BT0319.
  
     0.717
BT_2264
Outer membrane protein Omp121.
  
 
 0.717
BT_1440
SusC homolog.
 
 
   0.697
BT_2460
SusD homolog.
  
    0.680
BT_3103
SusC homolog.
 
   0.672
Your Current Organism:
Bacteroides thetaiotaomicron
NCBI taxonomy Id: 226186
Other names: B. thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron str. VPI-5482, Bacteroides thetaiotaomicron strain VPI-5482
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