Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BT_2299Conserved protein found in conjugate transposon; TraF homolog. (111 aa)    
Predicted Functional Partners:
BT_2298
Conserved protein found in conjugate transposon; TraG homolog, fragment.
 
    0.949
BT_2300
Conserved protein found in conjugate transposon; TraE homolog.
 
  
 0.931
BT_2303
Conserved protein found in conjugate transposon; TraA homolog.
 
    0.858
BT_2305
Mobilization protein BmgA-like.
 
    0.812
BT_2306
Mobilization protein C-like.
 
    0.811
BT_2292
Conserved protein found in conjugate transposon; TraK homolog.
 
    0.799
BT_4767
Conserved protein found in conjugate transposon; TraE homolog.
 
  
 0.797
BT_0095
Conserved protein found in conjugate transposon; TraE homolog.
 
  
 0.795
BT_0086
Conserved protein found in conjugate transposon; TraN homolog.
 
    0.794
BT_2289
Conserved protein found in conjugate transposon; TraN homolog.
 
    0.794
Your Current Organism:
Bacteroides thetaiotaomicron
NCBI taxonomy Id: 226186
Other names: B. thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron str. VPI-5482, Bacteroides thetaiotaomicron strain VPI-5482
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