Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BT_2409Putative TonB-dependent outer membrane protein. (799 aa)    
Predicted Functional Partners:
BT_2408
luxR family transcriptional regulator.
 
 
   0.629
BT_0496
TonB-dependent receptor.
  
  
 0.582
BT_4721
Conserved hypothetical protein.
  
    0.554
BT_2063
Conserved hypothetical protein, putative iron uptake factor.
 
  
 0.528
BT_2367
Acyltransferase.
  
    0.508
BT_4605
Conserved hypothetical protein; Cell wall-associated protein precursor-like.
  
    0.493
BT_1219
Putative peroxidase family protein.
   
  
 0.486
BT_2272
Conserved hypothetical protein.
  
    0.485
BT_2407
NAD-utilizing dehydrogenase.
       0.482
BT_2098
Fe3+ ABC transporter, periplasmic iron-binding protein.
     
 0.475
Your Current Organism:
Bacteroides thetaiotaomicron
NCBI taxonomy Id: 226186
Other names: B. thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron str. VPI-5482, Bacteroides thetaiotaomicron strain VPI-5482
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