STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BT_2448Putative DNA binding protein. (97 aa)    
Predicted Functional Partners:
BT_2652
Putative DNA binding protein.
 
     0.780
BT_1129
Putative DNA binding protein.
 
     0.764
BT_2651
Bacterial regulatory protein, Me-like protein.
 
     0.752
BT_3140
Putative DNA binding protein.
 
    0.745
BT_2334
Putative DNA binding protein.
 
    0.735
BT_4752
Conserved hypothetical protein.
 
    0.722
BT_0107
Putative DNA binding protein.
  
     0.716
BT_2332
Putative DNA binding protein.
  
    0.713
BT_4016
Conserved hypothetical protein.
  
     0.711
BT_4762
Conserved protein found in conjugate transposon; TraA homolog, fragment.
 
    0.688
Your Current Organism:
Bacteroides thetaiotaomicron
NCBI taxonomy Id: 226186
Other names: B. thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron str. VPI-5482, Bacteroides thetaiotaomicron strain VPI-5482
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.