STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BT_2525cephalosporin-C deacetylase. (452 aa)    
Predicted Functional Partners:
BT_4154
Chitin deacetylase.
  
  
 0.671
BT_3585
Putative oxidoreductase.
 
    0.623
BT_4110
Putative pectinesterase precursor.
 
    0.594
BT_2524
Alpha-rhamnosidase.
  
    0.570
BT_3586
Putative dehydrogenase.
 
    0.567
BT_4361
Conserved hypothetical protein.
  
    0.565
BT_2523
Alpha-rhamnosidase.
  
    0.563
BT_3463
Conserved hypothetical protein.
  
    0.525
BT_3609
Transcriptional regulator.
  
  
 0.524
BT_3593
Putative hydrolase lipoprotein.
 
    0.509
Your Current Organism:
Bacteroides thetaiotaomicron
NCBI taxonomy Id: 226186
Other names: B. thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron str. VPI-5482, Bacteroides thetaiotaomicron strain VPI-5482
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.