Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BT_2995Conserved hypothetical protein with relaxase/mobilization nuclease domain. (403 aa)    
Predicted Functional Partners:
BT_2994
Conserved hypothetical protein; Ribbon-helix-helix motif.
  
    0.804
BT_2996
Hypothetical protein.
  
    0.787
BT_4522
Putative type I restriction enzyme S.BthVORF4518BP.
 
  
 0.781
BT_3094
Putative secreted xylosidase; Belongs to the glycosyl hydrolase 43 family.
  
    0.731
BT_4547
Excisionase.
 
    0.721
BT_4014
Putative type II restriction endonuclease.
  
  
 0.717
BT_4521
Integrase; Belongs to the 'phage' integrase family.
  
    0.687
BT_1932
Putative transposase.
  
    0.634
BT_2645
Conserved hypothetical protein.
  
    0.610
BT_4013
Restriction endonuclease.
 
  
 0.599
Your Current Organism:
Bacteroides thetaiotaomicron
NCBI taxonomy Id: 226186
Other names: B. thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron str. VPI-5482, Bacteroides thetaiotaomicron strain VPI-5482
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