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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BT_3000Conserved hypothetical protein. (209 aa)    
Predicted Functional Partners:
BT_0574
Conserved hypothetical protein.
  
 
 0.552
BT_3001
ATP-dependent DNA helicase.
  
    0.548
rpoB
DNA-directed RNA polymerase beta chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 0.541
rpmE2
50S ribosomal protein L31 type B.
  
 
 0.524
BT_1752
Conserved hypothetical protein.
  
    0.512
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
   
 
 0.512
rpsU
Putative ribosomal protein S21; BT-GM2775; Belongs to the bacterial ribosomal protein bS21 family.
  
 
 0.507
rplT
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
 
 0.502
BT_3303
ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.
  
 0.502
BT_0831
ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.
  
 0.495
Your Current Organism:
Bacteroides thetaiotaomicron
NCBI taxonomy Id: 226186
Other names: B. thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron str. VPI-5482, Bacteroides thetaiotaomicron strain VPI-5482
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