Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BT_3152ATP-dependent DNA helicase. (511 aa)    
Predicted Functional Partners:
BT_3150
Transcriptional regulator.
 
    0.856
BT_3153
Putative DNA-binding protein.
 
    0.822
BT_3151
Hypothetical protein.
  
    0.800
BT_4229
Putative transcriptional regulator.
  
    0.752
BT_4600
Conserved hypothetical protein.
  
    0.730
BT_4293
Conserved hypothetical protein.
  
    0.725
BT_3637
Conserved hypothetical protein.
  
    0.707
BT_3432
Conserved hypothetical protein.
  
    0.671
BT_2553
Conserved hypothetical protein.
  
    0.645
BT_3137
Conserved hypothetical protein.
 
     0.625
Your Current Organism:
Bacteroides thetaiotaomicron
NCBI taxonomy Id: 226186
Other names: B. thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron str. VPI-5482, Bacteroides thetaiotaomicron strain VPI-5482
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