Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BT_3202Cell well associated RhsD protein precursor. (1337 aa)    
Predicted Functional Partners:
BT_3201
Hypothetical protein containing YD repeat.
 
    0.951
BT_1992
Hypothetical protein; Containing YD repeat.
 
    0.810
BT_3203
Hypothetical protein.
       0.773
BT_3205
Conserved hypothetical protein, putative cell wall associated RhsD protein.
 
    
0.508
BT_1455
Protein rtcB.
  
    0.475
BT_3200
Putative N-acetylmuramoyl-L-alanine amidase.
  
    0.475
BT_1486
Quinoprotein amine dehydrogenase-like protein.
  
 
 0.472
BT_3207
Conserved hypothetical protein, putative cell wall associated RhsD protein.
 
   
0.441
BT_1755
Putative exported 24-amino acid repeat protein.
  
    0.440
BT_0761
Conserved hypothetical protein; Putative exported 24-amino acid repeat protein.
  
     0.426
Your Current Organism:
Bacteroides thetaiotaomicron
NCBI taxonomy Id: 226186
Other names: B. thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron str. VPI-5482, Bacteroides thetaiotaomicron strain VPI-5482
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