Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BT_3243Conserved hypothetical protein. (443 aa)    
Predicted Functional Partners:
BT_3242
Hypothetical protein.
 
    0.976
BT_3241
SusD homolog.
 
    0.973
BT_3240
SusC homolog.
 
    0.945
BT_3237
Hypothetical protein.
 
    0.861
BT_3244
Hypothetical protein.
  
    0.849
BT_3238
SusD homolog.
 
    0.841
BT_3239
SusC homolog.
 
    0.840
BT_1049
Putative patatin-like protein.
  
     0.741
BT_3986
Putative patatin-like protein.
  
    0.729
BT_2259
Putative lipoprotein.
  
    0.725
Your Current Organism:
Bacteroides thetaiotaomicron
NCBI taxonomy Id: 226186
Other names: B. thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron str. VPI-5482, Bacteroides thetaiotaomicron strain VPI-5482
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