Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
BT_3307Lysine decarboxylase; Belongs to the LOG family. (161 aa)    
Predicted Functional Partners:
BT_3305
Fructokinase.
  
  
 0.832
BT_3306
Putative sugar isomerase.
  
  
 0.831
BT_3308
Putative zinc protease ymxG; Belongs to the peptidase M16 family.
  
    0.666
BT_3304
Possible protein-tyrosine-phosphatase.
  
    0.638
BT_3303
ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.
  
    0.469
BT_1529
Two-component system response regulator.
  
    0.453
BT_3309
Transcriptional regulator.
  
    0.452
Your Current Organism:
Bacteroides thetaiotaomicron
NCBI taxonomy Id: 226186
Other names: B. thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron str. VPI-5482, Bacteroides thetaiotaomicron strain VPI-5482
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