Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BT_3363Lipopolysaccharide core biosynthesis protein LpsA. (324 aa)    
Predicted Functional Partners:
BT_3362
Heptosyltransferase.
  
  
 0.847
BT_3364
Tyrosine protein kinase, active site.
  
  
 0.837
BT_3365
Glycoside transferase family 2.
  
  
 0.822
BT_3361a
Conserved hypothetical protein; BT-GM3401.
       0.688
BT_3378
GtrA-like protein.
 
  
 0.558
BT_3376
Nucleotide sugar transaminase; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.531
pdxB
Erythronate-4-phosphate dehydrogenase; Catalyzes the oxidation of erythronate-4-phosphate to 3- hydroxy-2-oxo-4-phosphonooxybutanoate.
  
  
 0.518
BT_3379
Glycoside transferase family 2.
  
  
 0.513
BT_0126
Six-hairpin glycosidase.
  
    0.496
BT_3373
Spermidine n1-acetyltransferase.
   
  
 0.490
Your Current Organism:
Bacteroides thetaiotaomicron
NCBI taxonomy Id: 226186
Other names: B. thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron str. VPI-5482, Bacteroides thetaiotaomicron strain VPI-5482
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