Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
BT_3407ABC transporter ATP-binding protein. (250 aa)    
Predicted Functional Partners:
BT_3406
ABC transporter permease.
 0.999
BT_3408
Conserved hypothetical protein, putative ABC transporter permease component.
 
 0.999
BT_3409
Aminotransferase, putative cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.995
BT_0174
Conserved hypothetical protein.
  
  
 0.892
BT_3696
Conserved hypothetical protein.
 
  
 0.838
BT_3405
Colicin V production protein.
  
    0.802
BT_2547
Fe-S metabolism associated SufE.
 
 
 0.800
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
  
  
 0.681
BT_3410
Conserved hypothetical protein; Belongs to the UPF0145 family.
  
  
 0.653
nusA
Putative nitrogen utilization substance protein; Participates in both transcription termination and antitermination.
  
    0.606
Your Current Organism:
Bacteroides thetaiotaomicron
NCBI taxonomy Id: 226186
Other names: B. thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron str. VPI-5482, Bacteroides thetaiotaomicron strain VPI-5482
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