Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BT_3497Peptidase aspartic, active site. (251 aa)    
Predicted Functional Partners:
BT_3498
Conserved hypothetical protein.
 
    0.941
BT_3499
Conserved hypothetical protein.
  
    0.720
BT_1796
Conserved hypothetical protein, putative membrane protein.
 
    0.660
BT_3500
Hypothetical protein.
 
    0.602
BT_3496
Hypothetical protein.
  
    0.568
BT_3492
Conserved hypothetical protein, with a conserved domain.
 
    0.554
BT_3495
SusD homolog.
  
    0.529
BT_4166
Putative lipoprotein.
  
    0.519
BT_3493
Putative outer membrane protein, probably involved in nutrient binding; SusC homolog.
  
    0.510
BT_3494
SusC homolog.
  
    0.510
Your Current Organism:
Bacteroides thetaiotaomicron
NCBI taxonomy Id: 226186
Other names: B. thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron str. VPI-5482, Bacteroides thetaiotaomicron strain VPI-5482
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