Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BT_3560TonB-dependent receptor. (846 aa)    
Predicted Functional Partners:
BT_3561
Conserved hypothetical protein.
 
  
 0.979
BT_3559
Endonuclease/exonuclease/phosphatase family.
 
  
 0.941
BT_3562
Conserved hypothetical protein; Endonuclease-like.
 
  
 0.929
BT_3558
Putative endonuclease.
  
  
 0.734
BT_0126
Six-hairpin glycosidase.
  
    0.595
BT_0151
Conserved hypothetical protein.
  
    0.557
BT_3555
Putative membrane protein.
   
  
 0.550
BT_3563
Putative endonuclease precursor.
 
    0.541
BT_3564
Putative DNA binding.
      
 0.521
BT_1552
SusC homolog.
 
  
 0.494
Your Current Organism:
Bacteroides thetaiotaomicron
NCBI taxonomy Id: 226186
Other names: B. thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron str. VPI-5482, Bacteroides thetaiotaomicron strain VPI-5482
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